Bionano Genomics Q4 2025 Earnings Results & Report

Bionano Genomics EPS Results

• Actual EPS: -$0.03
• Consensus EPS: -$0.81
• Beat/Miss: Beat by +$0.78
• One Year Ago EPS: N/A
• EPS Beat Rate: 6 of last 8 quarters

Bionano Genomics Revenue Results

• Actual Revenue: $7.95 million
• Expected Revenue: $7.88 million
• Beat/Miss: Beat by +$71.00 thousand
• YoY Revenue Growth: N/A

Bionano Genomics (NASDAQ:BNGO) is a life sciences company that develops genomic analysis solutions based on optical genome mapping (OGM). Its technology is designed to identify structural variations and other genomic abnormalities that may be difficult to detect with traditional sequencing and cytogenetic methods.

The company’s principal platform is the Saphyr system, which includes instrumentation, consumables and software for analyzing ultra-long DNA molecules. Bionano also provides data-analysis tools and informatics solutions intended to support research and clinical workflows in areas such as constitutional genetics, oncology and hematologic malignancies.

Bionano Genomics serves academic, government, pharmaceutical and biotechnology researchers, as well as clinical laboratories in the United States and international markets. The company was founded in 2003 and is headquartered in San Diego, California. Its leadership has included Erik Holmlin, who has served as president and chief executive officer.

Bionano Genomics Q4 2025 Earnings Call Transcript

Key Takeaways

• Positive Sentiment: Bionano initiated 2026 revenue guidance of $30 million–$33 million (about 5%–16% growth) and Q1 guidance of $6.5 million–$6.7 million, signaling management expects recovery and growth in 2026.
• Positive Sentiment: The company has shifted to a consumables/software-driven model focused on high-volume "routine use" customers; these routine users (~30–40% of customers) generated about 83% of OGM consumables revenue in 2025 and are the primary target for future growth.
• Positive Sentiment: Profitability improvements are material — full-year non‑GAAP gross margin rose to 47%, non‑GAAP operating expense fell 47% to $36.6 million, the company says it removed ~$100 million of annualized expense, and senior secured convertible debt is expected to be retired in May 2026.
• Negative Sentiment: Revenue and supply headwinds persist — FY2025 revenue declined 7% to $28.5 million (Q4 down 3%), flow‑cell sales were essentially flat, and late‑Q4 wafer manufacturing delays constrained consumable supply; cash on hand was ~$29.6 million with a stated runway into 2027, posing near‑term liquidity risk.
• Positive Sentiment: Adoption and reimbursement catalysts are accumulating — Bionano secured a second Category I CPT code and saw the hematology CPT price rise ~47% to $1,853.22, recorded ~450 publications in 2025, and rolled out software/hardware upgrades (VIA 7.2, Solve 3.8.3, Stratys compute) that increase throughput and broaden application scope.

Presentation

[Operator]

Good day, and welcome to the Bionano Q4 and full year 2025 earnings conference call. Today's conference is being recorded. At this time, I would like to turn the conference over to Webb Campbell from Gilmartin Group. Please go ahead.

[Webb Campbell, VP at Gilmartin Group]

Thank you, Carmen, and good afternoon, everyone. Welcome to Bionano's Q4 and full year 2025 financial results conference call. On the call today is Dr. Erik Holmlin, CEO and Principal Financial Officer of Bionano, and Mark Adamchak, Bionano's Vice President of Accounting and Principal Accounting Officer. After market close today, Bionano issued a press release announcing its financial results for the Q4 and full year 2025. A copy of the press release can be found on the investor relations page of the company's website. Certain statements made during this conference call may be forward-looking statements. Actual results may differ materially from such statements due to several factors and risks, some of which are identified in Bionano's press release and Bionano's report filed with the SEC.

[Webb Campbell, VP at Gilmartin Group]

These forward-looking statements are based on information available to Bionano today, March 23, 2026, and the company assumes no obligation to update statements as circumstances change. During our call, we may reference certain non-GAAP financial measures which we believe provide useful information for investors. Reconciliations of these measures to GAAP can be found in our press release and slide deck. An audio recording and webcast replay of today's conference call will also be available online on the investor relations page of the company's website. With that, I will turn the call over to Erik.

[Erik Holmlin, President and CEO at Bionano Genomics]

Thank you, Webb, and good afternoon, everyone. I'm excited to share our Q4 and full year 2025 results with you today, as well as to provide you with our expectations for 2026. I wanna begin, however, with the context of the broader space we're aiming to impact, namely pathology, which is the discipline that investigates the causes, developments, and effects of disease. Our products and solutions are focused on transforming pathology from tedious, slow, costly, and labor-intense analog workflows of the past towards streamlined workflows of a digital future defined by technology and platform consolidation, automation, and powerful AI-driven software. Our work in 2025, including the hundreds of publications and presentations by our users, demonstrated meaningful progress toward this goal and the significant value represented by this opportunity.

[Erik Holmlin, President and CEO at Bionano Genomics]

As part of today's call, I wanna take time to review the strategy we began implementing in September of 2024, our progress in 2025, and summarize key takeaways from a deep dive into our customer base, revealing the composition of our most profitable customer profile. First, however, I wanna ask Mark Adamchak, our Principal Accounting Officer, to review our Q4 and 2025 financial highlights. Mark.

[Mark Adamchak, VP of Accounting at Bionano Genomics]

Thanks, Erik. Revenue for the Q4 of 2025 was $8 million, which is down 3% from $8.2 million in Q4 2024, but at the high end of our pre-announced range of $7.8 million-$8 million. We sold 7,554 nanochannel array flow cells in Q4, which is down 6% year-over-year. It's worth noting that late in Q4, our manufacturing partner that makes the silicon wafers for our chip consumables experienced delays. As a result, supply was constrained against higher consumable demand. We entered 2026 with a healthy backlog of consumables demand and that we expect to realize in the coming quarters as these constraints ease. For the full year 2025 revenue was $28.5 million, down 7% from $30.8 million in 2024.

[Mark Adamchak, VP of Accounting at Bionano Genomics]

After adjusting for $1.7 million in discontinued clinical services in 2024, core revenue was down 2%. We sold 30,171 flow cells in 2025, down just 0.4% year-over-year. We also installed 9 OGM systems in Q4 and 32 for full year 2025, exceeding our original guidance of 15-20 installations in the year. Turning to profitability, non-GAAP gross margin for the Q4 of 2025 was 43%, up from 42% a year ago. For the full year, non-GAAP gross margin was 47%, up from 35% in the full year 2024, an improvement of 1,200 basis points year-over-year despite lower revenue. This reflects the efficiencies we are driving in our business under our new strategy.

[Mark Adamchak, VP of Accounting at Bionano Genomics]

Q4 2025 non-GAAP operating expense was $9.7 million, down 9% year-over-year. For the full year, non-GAAP operating expense was $36.6 million, down 47% from $68.9 million in 2024. Importantly, since Q2 2023, we have removed approximately $100 million of annualized non-GAAP operating expense and reduced headcount by over 300 people. The transformation of our cost structure is clearly evident in these results. We ended the year with $29.6 million in cash equivalents, and available-for-sale securities, including $10.3 million subject to certain restrictions. Based on factors described in our 10-K, we expect our cash runway to extend into 2027.

[Mark Adamchak, VP of Accounting at Bionano Genomics]

I'd also note that our senior secured convertible debt is expected to be fully retired in May 2026, which will mark a meaningful balance sheet milestone that will further simplify our financial profile. With that, I'll turn it back over to Erik to review our strategic progress and achievements in 2025 and finish by providing financial guidance for 2026. Erik?

[Erik Holmlin, President and CEO at Bionano Genomics]

Thanks, Mark. That was an excellent job in your first time participating in one of our calls here. It's great to have you. In response to the challenging backdrop for tools and diagnostic companies that has persisted for some time now, we made a strategic shift that started in September 2024 and entailed going away from aggressively expanding our installed base toward focusing on profitable growth from high volume users and selective customer acquisition. We established four strategic pillars to anchor this execution. First, is to support and sustain the installed base of routine OGM and VIA software users. Second, to increase the utilization of optical genome mapping by these routine users by supporting menu expansion and improving ease of use with VIA software and our Ionic system, which automates isolation of nucleic acids.

[Erik Holmlin, President and CEO at Bionano Genomics]

Third, is to build the support needed for optical genome mapping reimbursement and inclusion into medical society guidelines and recommendations. Fourth, is to improve profitability and scalability through lower costs, higher volumes, and continuous improvement in product quality. Starting with this first and second pillars, tied to enabling our customers to use products more, which will in turn result in higher consumable sales. While Q4 flow cells were down 7% at 7,554, and full year flow cells sold were essentially flat at 30,171. 2025 was certainly a transitional year where we faced uncertainty as to how stable the customer base would be during this strategic shift. We're pleased to see stability and consistency in the number of consumables that were purchased.

[Erik Holmlin, President and CEO at Bionano Genomics]

If we remove flow cells tied to sales of new OGM systems in both periods, existing flow cell customers, existing sales of flow cells to customers declined 4% in the Q4, but grew 5% for the full year. Keep in mind that the consumable supply was constrained in the Q4, which muted some of that growth. Taken together, consumables and software revenue decreased by 1% to $4.8 million in Q4, driven by a 22% decline in software revenue, and that actually offset 8% growth in consumables. The year-over-year decline in software revenue is a result of a handful of orders that were actually pulled forward into prior quarters. If we look and see that software grew 7% for the full year from nineteen.

[Erik Holmlin, President and CEO at Bionano Genomics]

Consumables and software together, that is, grew for the full year from $19 million to $20.4 million, which represents 7% growth. As a share of total revenue increased from 62% in 2024 to 71% in 2025. We believe this emphasis on consumables and software is a healthier, more predictable revenue profile that is also more profitable. Now, I want to talk a little bit about the composition of our installed base, and this is something that we brought up on calls over the course of 2025, and I want to focus in on the customer profile that we've identified as the target for future growth. Throughout 2025, we focused on a subset of customers, so-called routine use customers. Those are customers who we believe have the greatest potential to purchase higher average volumes of OGM consumables.

[Erik Holmlin, President and CEO at Bionano Genomics]

We also maintain a high level of support for our Ionic system users and our VIA software users who use VIA software for non-OGM applications. Our geographic focus has also narrowed to include the United States, Canada, most of Western Europe, and Israel, although we have the help of excellent commercial partners who sell and support OGM outside of these regions. Looking across the 321 customers that have a total of 387 OGM systems installed as of December 31, 2025. Routine use customers comprise about thirty or forty percent of them, and they collectively operate about 175 systems or 45% of the global installed base.

[Erik Holmlin, President and CEO at Bionano Genomics]

Routine use customers, by definition, have well-defined applications for OGM and a steady flow of samples coming into the lab for analysis and tend to have institutionalized funding for OGM, meaning they are not solely dependent upon raising grant funding for each individual project, although grants do support these sites. Despite accounting for less than half of total OGM customers, these routine users actually drive the consumables business. In 2025, they accounted for about 83% of OGM consumables revenue. The average revenue per routine use customer in 2025 was about $89,000 or double the average per customer across the entire global installed base. Currently, there are about 60 routine use customers that have validated their OGM protocol. In 2025, those customers accounted for about 56% of total consumables revenue and 69% of the consumables revenue coming from routine users.

[Erik Holmlin, President and CEO at Bionano Genomics]

Their average consumables revenue per year is $131,000 per customer. We also believe that there are about 55 routine use customers who intend to validate an OGM protocol in the future, and about 15 who use OGM routinely, but do not intend to validate. Going forward, we see the number of routine use customers increasing as new customer acquisition will focus on this customer type almost exclusively. We also see average consumable revenue per routine use site increasing as they expand their menus to include new applications and as others validate their protocols, and begin offering their products commercially. Regarding our second pillar, we can help routine use customers in a variety of ways by including in techniques and tools that enhance their ease of use with products like VIA software and our Ionic system for automated nucleic acid isolation.

[Erik Holmlin, President and CEO at Bionano Genomics]

In 2025, we made great progress to integrate VIA into customer workflows and upgrade our software and compute platforms to make analysis of OGM microarray and next-generation sequencing data faster, easier, and more accurate. On this front, in 2025, we commenced a broad commercial release of our software and compute upgrades in the Q4. VIA 7.2 extends the AI-driven OGM workflow from hematologic malignancies into constitutional genetic disorders, giving labs the same automated curation and report capabilities that have accelerated hematologic malignancy workflows. Solve 3.8.3 expands the structural variation control database and improves detection accuracy, while the Stratys compute upgrade using advanced GPUs doubles weekly cancer sample throughput without any hardware change. VIA's reach extends beyond OGM.

[Erik Holmlin, President and CEO at Bionano Genomics]

It's the gold standard for copy number variation analysis in microarrays and is gaining traction with next-generation sequencing and even long-read sequencing users. These non-OGM VIA customers represent a meaningful software revenue stream and a natural on-ramp to broader Bionano adoption at these customer sites. The Ionic system continues to expand, delivering high-purity DNA and RNA for both NGS workflows and of course, high-purity, ultra-high molecular weight DNA for OGM workflows at scale. To build support for reimbursement and guideline recommendations, we're pleased to see incredible traction across the OGM community with publications that can support reimbursement decisions, professional society guidelines, and new customer adoption. The Q4 of 2025 was a record quarter for OGM publications, 136 new peer-reviewed publications, up 25% year-over-year.

[Erik Holmlin, President and CEO at Bionano Genomics]

2025 also saw approximately 450 publications in total, up from 359 in 2024. The total number of publications exhibits a compound annual growth rate of about 28% since 2020. In addition, the community has published roughly 1,190 human clinical research genomes in the Q4 of 2025 alone, which brings the cumulative total to nearly 12,700, up from fewer than 500 in 2021, and 4,500 added in 2025 alone. That growth reflects a compound annual growth rate of about 30% since 2021. We believe these publications are an excellent leading indicator for the growing acceptance and future adoption and utilization of Bionano products and solutions.

[Erik Holmlin, President and CEO at Bionano Genomics]

Now, thanks to all of this progress, reimbursement improved significantly in 2025 with the establishment of a second Category I CPT code for OGM, this one covering OGM use in constitutional genetic disorders. The final price determination was $1,263.53. That appears on the 2026 clinical lab fee schedule. In addition, the 2026 CLFS reflects a 47% increase in the payment determination for the Category I CPT code used for OGM in hematologic malignancies. That's now priced at $1,853.22, which is up from $1,263.53. Taken together, these two codes cover OGM's current primary application areas and represent key infrastructure that's now in place.

[Erik Holmlin, President and CEO at Bionano Genomics]

We are also seeing an OGM consortia from all over the globe coming together. These regional user groups help with things like access to reimbursement, influencing local guidelines, which together facilitate menu expansion and overall support the entire community of OGM users along their journey. We believe this validation. This is validation that OGM is really taking off, and we are gaining this critical mass that is so important, where the community is becoming the advocate versus the company, which is historically been the case. Regarding our final strategic pillar of improving profitability and scalability, we continue to make progress in 2025, highlighted by the non-GAAP gross margin expansion we mentioned earlier. Our non-GAAP gross margins have now expanded from 22% in the Q1 of 2023 to 43% in the Q4 of 2025.

[Erik Holmlin, President and CEO at Bionano Genomics]

While quarterly non-GAAP operating expenses fell from roughly $34 million to now under $10 million over that same period. Going forward, we expect margin expansion in line with revenue as volumes grow and product mix shifts towards consumables, and this is going to help us manage toward important financial milestones such as EBITDA breakeven. Finally, I want to highlight the excellent efforts from our team to host Bionano Symposium 2026. This event is held in late February, and this year we had over 1,250 registrants coming from 73 countries around the world. The content featured 35 outside speakers presenting 33 presentations, and the community contributed 50 posters to our poster hall. The event itself lasted 4 days, and among the many excellent presentations, 4 reflected key themes that suggest growth opportunities for OGM going forward. Dr.

[Erik Holmlin, President and CEO at Bionano Genomics]

Agnès Dorion from Lille described how the French Optical Genome Mapping group or FROG is acting as a network in support of implementation of OGM across 29 French-speaking laboratories in France, Canada, Switzerland, and Belgium. Dr. Ying Xu from Johns Hopkins University School of Medicine presented the largest OGM data set in sarcomas, revealing complex abnormalities and novel biomarkers in karyotypically normal cases. These sarcomas represent an expansion of sample type from the blood and bone marrow aspirates that are commonly used with OGM today. There were two speakers who spoke to an incredibly important theme in Bionano Symposium 2026, which is OGM at scale. Dr. Alexander Hoischen from Radboud University Medical Center in the Netherlands described fully automating ultra-high molecular weight DNA isolation and labeling for OGM and their plans to ramp to processing 3,000 samples per year, up from just 500 in 2025.

[Erik Holmlin, President and CEO at Bionano Genomics]

Radboud now has 3 Stratys systems and 2 Saphyr systems, making them the lab with the most OGM capacity in the world, aside from Bionano's, of course. Dr. Adam Smith of Labcorp presented a rigorous comparison showing that a scaled Stratys workflow can process up to 10,000 cancer samples per year, versus approximately 240 for a similar high-throughput long-read sequencing platform. The cost of OGM is less than one-eighth of the initial capital investment for processing 1,000 long-read sequencing samples per year. We believe OGM is moving from early adoption into operation at scale, and academic networks like the FROG, academic medical centers like Johns Hopkins and Radboud University Medical Center, and national reference laboratory institutions like Labcorp are building the operational and use cases for it.

[Erik Holmlin, President and CEO at Bionano Genomics]

All of this progress and support gives me confidence in a strong outlook for the full year 2026. Therefore, we are initiating revenue guidance of $30 million-$33 million, representing 5%-16% growth over 2025. For this Q1 of 2026, we are initiating revenue guidance of $6.5 million-$6.7 million, representing flat to 3% growth over 2025. As our Q1 expectations imply, we do expect revenues to grow throughout the year, consistent with the seasonality common in our business as we continue executing on our mission to increase the use of our differentiated capabilities among our valued customers. We're very excited about this work and the journey ahead of us at Bionano. With that, I would like to open the line now for questions. Carmen?

[Operator]

Thank you so much. As a reminder, if you do have a question, simply press star one one on your telephone and wait for your name to be announced. To remove yourself, press star one one again. Again, if you do have questions, press star one one to get in the queue. We have a question from the line of Yi Chen with H.C. Wainwright. Please go ahead.

[Yi Chen, Managing Director and Senior Analyst at H.C. Wainwright & Co.]

Thank you for taking my question. Could you give us any color on what your expectations regarding how many new OGM systems could be installed during 2026?

[Erik Holmlin, President and CEO at Bionano Genomics]

Yeah. Hi, Yi. Thank you for joining and, you know, asking an important question. I think that, you know, we have expectations which are comparable to, you know, what, you know, we shipped last year. We're not really providing any guidance on the number because as you can see, we significantly actually overperformed guidance last year and so, you know, we wanna just stay flexible about the, you know, new systems that are being installed but it's reasonable that we would have a comparable year this year to what we did last year.

[Yi Chen, Managing Director and Senior Analyst at H.C. Wainwright & Co.]

Got it. Also the reported number of nanochannel array flow cells sold in 2025 is slightly below the number in 2024, while you installed 32 new OGM systems and brought back 16 during the year. How should we look at the nanochannel array flow cells? I mean, how should we expect the number of nanochannel array flow cells to be sold this year? Do you expect that to be relatively flat as well?

[Erik Holmlin, President and CEO at Bionano Genomics]

Yeah, I mean, so no. No, the answer is no. I would say that, you know, when you look at the revenue growth that we're forecasting, you know, that revenue growth is gonna be driven by, you know, new systems of course, and consumables at existing customers. I think, you know, I would expect the consumables volume range to likely track with the revenue growth, which is a wide range, but, you know, that's our expectation. You know, we were flat year-over-year on total consumables volume. You know, when we look at what routine users did, you know, we do see that routine users grew 2025 over 2024.

[Erik Holmlin, President and CEO at Bionano Genomics]

You know, keep in mind that, you know, we were constrained with supply at the end of the year. It's nothing that's particularly concerning. It's a supply constraint that will, you know, I think, work its way out over the course of the next couple of quarters. You know, if we weren't up against that supply constraint, we would've had, you know, additional units growth.

[Yi Chen, Managing Director and Senior Analyst at H.C. Wainwright & Co.]

Your guidance for 2026, you provided, $30 million-$33 million, which translates to approximately 5%-16% top line growth. Do you need to sell how many nanochannel or new OGM systems to achieve that level of growth? Is there any catalyst that you expect to occur in 2026 in order to achieve that level of top line growth?

[Erik Holmlin, President and CEO at Bionano Genomics]

I mean, I think so, you know, again, we're not gonna, you know, put a number out there of systems. I think, you know, really the reason is that we wanna keep the focus on the productivity of the routine users. You know, we'll be updating on some of the dynamics of that group over the year, right? If you look at total number of customers at the end of the year, 321, total systems installed, 387. You know, 32 systems shipped in the year. You know, it's really about these 130 or so routine use customers, 60 of which have validated an OGM protocol and roughly 55 are intending to do that at some point in the future.

[Erik Holmlin, President and CEO at Bionano Genomics]

You know, how can we take that 55 and, you know, convert them over to the validated group, and then how can we expand revenues among the validated group? You know, that's where we expect the growth to come from. You know, as long as we kind of repeat on a year-over-year basis some of the same dynamics, we'll hit these numbers. From a catalyst perspective, a big catalyst is the increase in the price determination for the hematologic malignancy CPT code 81195. 47% increase, you know, $1,200-$1,800. You know, that is a big driver. That became effective January 1, 2026.

[Erik Holmlin, President and CEO at Bionano Genomics]

you know, we have seen the positive effects just of the originally priced code, and we expect this higher price to, you know, even accelerate adoption and utilization more. That's a major catalyst.

[Yi Chen, Managing Director and Senior Analyst at H.C. Wainwright & Co.]

Okay, got it. Thank you.

[Operator]

Thank you, and this concludes our Q&A session. I will pass it back to Erik for final comments.

[Erik Holmlin, President and CEO at Bionano Genomics]

Okay. Thank you, Carmen, and thank you everybody for joining. You know, we look forward to updating folks on our progress in the Q1 of 2026 in the not too distant future. Thank you very much.

Participants

Executives

• Erik Holmlin, President and CEO
• Mark Adamchak, VP of Accounting

Analysts

• Webb Campbell, VP at Gilmartin Group
• Yi Chen, Managing Director and Senior Analyst at H.C. Wainwright & Co.